Generating and Displaying an Electostatic Surface

From Bridges Lab Protocols
Revision as of 00:20, 10 October 2009 by Davebrid (talk | contribs) (Created page with '==Programs Required== *Pymol *APBS ===Generate PQR File for the Structure=== #Download or generate PDB file. #Go to the PDB2PQR server at http://pdb2pqr-1.wustl.edu/pdb2pqr/. T...')
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Programs Required

  • Pymol
  • APBS

Generate PQR File for the Structure

  1. Download or generate PDB file.
  2. Go to the PDB2PQR server at http://pdb2pqr-1.wustl.edu/pdb2pqr/. THe default settings (AMBER forcefield, internal naming scheme)
  3. Save the pqr file.
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